htsinfer
- htsinfer package
- Submodules
- htsinfer.cli module
- htsinfer.exceptions module
- htsinfer.get_library_source module
- htsinfer.get_library_stats module
- htsinfer.get_library_type module
- htsinfer.get_read_layout module
- htsinfer.get_read_orientation module
GetOrientationGetOrientation.pathsGetOrientation.library_typeGetOrientation.library_sourceGetOrientation.transcripts_fileGetOrientation.tmp_dirGetOrientation.threads_starGetOrientation.min_mapped_readsGetOrientation.min_fractionGetOrientation.evaluate()GetOrientation.get_frequencies()GetOrientation.process_alignments()GetOrientation.process_paired()GetOrientation.process_single()GetOrientation.sum_dicts()
- htsinfer.htsinfer module
- htsinfer.mapping module
- htsinfer.models module
ArgsArgs.path_1Args.path_2Args.out_dirArgs.run_idArgs.tmp_dirArgs.cleanup_regimeArgs.recordsArgs.threadsArgs.transcripts_fileArgs.read_layout_adapter_fileArgs.read_layout_min_match_pctArgs.read_layout_min_freq_ratioArgs.lib_source_min_match_pctArgs.lib_source_min_freq_ratioArgs.lib_type_max_distanceArgs.lib_type_mates_cutoffArgs.read_orientation_min_mapped_readsArgs.read_orientation_min_fractionArgs.path_1_processedArgs.path_2_processedArgs.t_file_processedArgs.stateArgs.resultsArgs.cleanup_regimeArgs.lib_source_min_freq_ratioArgs.lib_source_min_match_pctArgs.lib_type_mates_cutoffArgs.lib_type_max_distanceArgs.model_computed_fieldsArgs.model_configArgs.model_fieldsArgs.out_dirArgs.path_1Args.path_1_processedArgs.path_2Args.path_2_processedArgs.read_layout_adapter_fileArgs.read_layout_min_freq_ratioArgs.read_layout_min_match_pctArgs.read_orientation_min_fractionArgs.read_orientation_min_mapped_readsArgs.recordsArgs.t_file_processedArgs.tax_idArgs.threadsArgs.tmp_dirArgs.transcripts_file
CleanupRegimesConfigLayoutLogLevelsReadLengthResultsResultsLayoutResultsOrientationResultsSourceResultsStatsResultsTypeRunStatesSeqIdFormatsSourceStatesOrientationStatesOrientationRelationshipStatesOrientationRelationship.inward_stranded_forwardStatesOrientationRelationship.inward_stranded_reverseStatesOrientationRelationship.inward_unstrandedStatesOrientationRelationship.not_availableStatesOrientationRelationship.inward_stranded_forwardStatesOrientationRelationship.inward_stranded_reverseStatesOrientationRelationship.inward_unstrandedStatesOrientationRelationship.not_available
StatesTypeStatesType.file_problemStatesType.first_mateStatesType.mixed_matesStatesType.not_availableStatesType.second_mateStatesType.singleStatesType.first_mateStatesType.first_mate_assumedStatesType.mixed_matesStatesType.not_availableStatesType.second_mateStatesType.second_mate_assumedStatesType.single
StatesTypeRelationshipStats
- htsinfer.subset_fastq module
- htsinfer.utils module